#Get sdata tool install

For building the binaries from the source code, please refer to the GDC DTT Client GitHub Repository. If you are a user of RedHat Enterprise Release 6 and wish to use the Data Transfer Tool Client, please contact the GDC Help Desk for assistance.

Storage: Enterprise-class storage system capable of в‰Ґ1 Gb/s (Gigabit per second) write throughput and sufficient free space for BAM files, most of which are in the 50 MB - 40 GB size range, with some reaching sizes of 200-300 GB.

OS: Linux (Ubuntu 14.x or later, CentOS 7), OS X (10.9 Mavericks or later), or Windows (7 or later).

Downloading the GDC Data Transfer Tool System Recommendations For additional instructions, please visit the GDC Data Transfer Tool User's Guide.

GDC Data Transfer Tool User Interface (UI) вЂ“ A graphical interface to the GDC Data Transfer Tool Client for downloading data from the GDC.Д«elow are basic instructions and links for downloading the GDC Data Transfer Tool Client and UI.

Recommended for users with more command line experience that require large data transfers of GDC data or need to download a large numbers of data files.

GDC Data Transfer Tool Client вЂ“ A command-line tool supporting both GDC data downloads and submissions.

The GDC Data Transfer Tool provides an optimized method of transferring data to and from the GDC and enables resumption of interrupted transfers. In such cases, a high-performance data download and submission tool, such as the GDC Data Transfer Tool, is essential. When the scan is finished, locate SDATA Tool.exe in the scan result and tick the checkbox next to the SDATA Tool.exe file. The scan will finish in approximately five minutes.

#Get sdata tool install

The size for a single file can vary greatly depending on the specific analysis However, some of the whole genome BAM files in The Cancer Genome Atlas (TCGA) reach sizes of 200-300 GB. Download and install FreeFixer: Start FreeFixer and press the Start Scan button.

Raw sequence files, typically stored as BAM or FASTQ,В make up the bulk of data in the GDC. The GDC provides a standard client-based mechanism supporting high-performance data downloads and submission.